Technology Stack
Essential Tools We Use
Curated links to widely-used, open-source tools and communities we integrate into our Cloud-native NGS and genomics workflows.
NetworkSuite
Interactive biological network visualization. Analyze PPIs, overlay expression data, and explore pathways.
Cancer Knowledge Graph
Federated multi-omics graph database. Query cBioPortal and Open Targets in real-time for patiet-centric insights.
DGE Engine
Cloud-native Differential Gene Expression analysis. Run DESeq2, edgeR, and limma-voom pipelines directly in your browser.
Primer Validator
Interactive tool to check PCR primers for binding specificity, melting temperature (Tm), and structural defects.
Nextflow
A portable, reproducible workflow engine for building scalable bioinformatics pipelines (cloud & HPC).
nf-core
Community-curated collection of production-grade Nextflow pipelines and best-practice templates.
GATK
Industry-standard toolkit for variant discovery and genotyping; widely used in germline and somatic workflows.
Ensembl VEP
Variant Effect Predictor — annotation of variants with predicted consequences and clinical databases.
SAMtools / BCFtools
Core utilities for sequence alignment manipulation and variant file (VCF/BCF) handling.
Seurat
Comprehensive R toolkit for single-cell RNA-seq analysis: preprocessing, integration, clustering.