AlphaOmics

Predict gene expression, splicing, and chromatin profiles from DNA sequence alone.

AWS Serverless

Prediction Mode

Genome Build

Chromosome

Start (bp)

End (bp)

Upload File

Target Cell Types (Multi-select)

Visible Tracks

Email Notification

Ready to Analyze

Configure scientific parameters on the left to initialize the inference engine.

Analysis Job Active

Job ID:

_

Analysis Complete

Recent Runs

No recent jobs.

Predicted Regulatory Tracks (1bp Resolution)

DNAse

H3K27ac

Show Overlays

Cell Type Selectivity Heatmap

Regulatory Network Graph

Visualize transcription factor binding sites and enhancer-promoter interactions in a force-directed graph.
(Coming in v2.1)

Predicted High-Impact Variants

Variant	Pos	Ref/Alt	Score	Predicted Effect	Type	Est. Effect (Delta)	ClinVar	GO Term	Actions
		→						AlphaFold3 Pathways

Documentation & Help

Quick Start Tutorial

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Freqently Asked Questions

AlphaOmics utilizes the underlying architecture of Google DeepMind's AlphaOmics to predict gene expression and epigenetic states from DNA sequence. It provides researchers with an exponential advantage in understanding the regulatory genome.

We support standard BED files (chr, start, end) and VCF v4.2 files. Gzipped files (.gz) are also supported up to 100MB.

1. Select Input: Choose Manual Mode (coordinates), FASTA upload, or VCF upload.

2. Configure: Use "Scientific Configuration" to select target cell types and visualization tracks.

3. Run: Click "Run Analysis" to submit your job to the cloud.

4. Analyze: Explore the interactive genome browser, view variants, and download results.

API Access

Automate your analysis using our REST API.

BASH

curl -X POST \
https://api.sequensolutions.com/alphaomics \
-d '{"chr": "chr1", "start": 100, "end": 200}'

View Full API Documentation →